{
    "fovs": [
        "fov0",
        "fov1",
        "fov10",
        "fov2",
        "fov3",
        "fov4",
        "fov5",
        "fov6",
        "fov7",
        "fov8",
        "fov9"
    ],
    "channels": [
        "CD3",
        "CD4",
        "CD8",
        "CD14",
        "CD20",
        "CD31",
        "CD45",
        "CD68",
        "CD163_nuc_exclude",
        "CK17",
        "Collagen1",
        "Fibronectin",
        "ECAD_smoothed",
        "HLADR",
        "SMA",
        "Vim"
    ],
    "segmentation_dir": "segmentation/deepcell_output",
    "seg_suffix": "_whole_cell.tiff",
    "pixel_data_dir": "pixie/example_pixel_output_dir/pixel_mat_data",
    "pc_chan_avg_som_cluster_name": "pixie/example_pixel_output_dir/pixel_channel_avg_som_cluster.csv",
    "pc_chan_avg_meta_cluster_name": "pixie/example_pixel_output_dir/pixel_channel_avg_meta_cluster.csv"
}